Observed arrival · 2026-10-13
Kromla: epigenomics pipelines without the bioinformatics queue
Kromla presents cloud pipelines for ChIP-seq, ATAC-seq, CUT&Tag and methylation work, with FASTQ uploads, plain-language experiment descriptions and downloadable analysis outputs.
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- Wet-lab biologists running epigenomics assays
- Worth noticing
- Its H3K27me3 example pairs each IP with its own input and uses broad-peak calling with MACS3.
Field notes
The described workflow starts with FASTQ upload, file checks and adapter detection, then lets the user describe the experiment in plain language. A displayed H3K27me3 example shows broad-peak calling (MACS3, q 0.05), replicate-matched input controls and a six-credit estimate. Listed assay paths include ChIP-seq, CUT&Tag/CUT&RUN, ATAC-seq and WGBS/RRBS/EM-seq; the page says each step can be inspected, tuned or replaced.
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