Observed arrival · 2026-11-07
CodeISB’s RNA-seq audit
CodeISB presents bulk RNA-seq analysis paired with checks for sample swaps, outlier libraries, and batch confounding.
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- For
- RNA-seq labs, researchers, and core facilities
- Worth noticing
- The six-sample example flags a possible sample swap using sex-linked expression, alongside batch and replicate warnings.
Field notes
The illustrated run records GRCh38, DESeq2, and the parameters used, and includes a full-rank design-matrix check. Its sample-identity warning compares the recorded sex label with XIST and Y-linked expression, while a separate warning notes that all treated samples fall in one batch. The site also cautions that its checks cannot repair weak experimental design or guarantee a result.
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Editorial observations of this landing page, not a rating.
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